PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG514900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 416aa    MW: 43999.2 Da    PI: 6.0241
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG514900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-13203249354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  Pavir.9KG514900.1.p 203 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 249
                          79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.022200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-11203249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15204270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15204271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-5213252No hitNo description
Gene3DG3DSA:3.30.70.2607.5E-4287338No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGGHGDHHLQ EVGVLVDDDE EELELHQARV CGGATSGVVE QDAGCCPEAA AGMVFEASSS  60
VGSVSATMAQ PQLLGWPTPP PAPPQQQLHH HHHHHHHHSV SGGEAPFFPL LPPLPPQPPP  120
PPPFLADFYA RRALQFAYDH HHHHHSGGAS TSSDPLGLGG LYMGHHGGSG MMMPPPFASS  180
PFGDFGRMTA QEIMDAKALA ASKSHSEAER RRRERINAHL ARLRSLLPNT TKTDKASLLA  240
EVIQHVKELK RQTSEITEEA CPLPTESDEL TVDASSEEDG RLVVRASLCC DDRADLLPDL  300
IRALKALRLR ALKAEITTLG GRVKNVLFIT GDDSAAAGCE GAADDDQQEE AAAAAPMSPQ  360
HTVASIQEAL RAVMERTASA AAEEPGAAPS GGAGAAGLKR QRTTSLSAIL ENRSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208213ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066490.0AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984717.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y12e-74BH030_ARATH; Transcription factor bHLH30
TrEMBLK4ALF00.0K4ALF0_SETIT; Uncharacterized protein
STRINGSi039730m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-55bHLH family protein